Variant report

Variant	rs36038131
Chromosome Location	chr10:92644643-92644644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:92644272-92645337	Hela-S3	cervix:	n/a	chr10:92644547-92644559
2	NFIC	chr10:92644558-92645448	SK-N-SH	brain:	n/a	chr10:92644752-92644780
3	EP300	chr10:92644570-92645632	Hela-S3	cervix:	n/a	chr10:92645550-92645564
4	RFX5	chr10:92644335-92645377	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr10:92644347-92645558	Hela-S3	cervix:	n/a	n/a
6	TCF12	chr10:92644581-92645406	SK-N-SH	brain:	n/a	n/a
7	TCF7L2	chr10:92644372-92645131	Hela-S3	cervix:	n/a	n/a
8	TCF12	chr10:92644616-92645486	SK-N-SH	brain:	n/a	n/a
9	GATA3	chr10:92644471-92645490	SK-N-SH	brain:	n/a	chr10:92644475-92644486 chr10:92645326-92645334
10	GATA3	chr10:92644536-92645441	SK-N-SH	brain:	n/a	chr10:92645326-92645334

No.	Distal block	Cell Line	Cell type
1	chr10:92630780..92633126-chr10:92644607..92647614,3	MCF-7	breast:
2	chr10:92643406..92646204-chr10:92648887..92653001,3	K562	blood:
3	chr10:92643406..92644970-chr10:92648887..92651723,2	K562	blood:
4	chr10:92643704..92645965-chr10:92716834..92718862,2	K562	blood:

Variant related genes	Relation type
ENSG00000222305	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10881830	0.85[ASN][1000 genomes]
rs12256352	0.85[ASN][1000 genomes]
rs12762083	0.88[ASN][1000 genomes]
rs12765470	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12768638	0.85[ASN][1000 genomes]
rs12775181	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12776459	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301914	0.85[ASN][1000 genomes]
rs34479797	0.88[ASN][1000 genomes]
rs35358531	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
2	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:92632800-92647800	Weak transcription	Gastric	stomach
6	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
7	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
8	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
10	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
11	chr10:92633200-92650000	Weak transcription	Fetal Heart	heart
12	chr10:92633600-92646000	Weak transcription	Right Ventricle	heart
13	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
27	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:92635400-92655200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:92635800-92651400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:92636600-92644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:92636800-92646800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
35	chr10:92637200-92646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:92637800-92652800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:92638000-92645000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:92638000-92645600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:92638000-92648000	Weak transcription	Lung	lung
40	chr10:92638200-92646000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:92638600-92645800	Weak transcription	Fetal Stomach	stomach
42	chr10:92638600-92646600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:92638600-92646600	Weak transcription	Fetal Intestine Small	intestine
44	chr10:92638600-92646600	Weak transcription	Thymus	Thymus
45	chr10:92638600-92647400	Weak transcription	Spleen	Spleen
46	chr10:92638600-92647800	Weak transcription	Pancreas	Pancrea
47	chr10:92638800-92646200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:92639000-92652600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:92639400-92645400	Weak transcription	Fetal Kidney	kidney
50	chr10:92639400-92658600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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