Variant report

Variant	rs1277749
Chromosome Location	chr10:18520966-18520967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11013065	0.83[ASN][1000 genomes]
rs11013093	0.82[AFR][1000 genomes]
rs11013094	0.81[AFR][1000 genomes]
rs1277745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277747	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1277748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277754	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1757225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779207	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779209	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779217	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs2250996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2482110	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
3	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
5	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:18515400-18522000	Weak transcription	Ovary	ovary
7	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
9	chr10:18518000-18521000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:18518000-18521000	Enhancers	Osteobl	bone
11	chr10:18519200-18521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:18519400-18521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18519400-18522400	Weak transcription	Fetal Heart	heart
14	chr10:18519600-18522600	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:18520800-18521000	Enhancers	NH-A	brain
16	chr10:18520800-18525600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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