Variant report

Variant	rs1757226
Chromosome Location	chr10:18517019-18517020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11013065	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1277745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277747	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs1277748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277750	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277754	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1757225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779209	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1779217	0.84[ASN][1000 genomes]
rs2250996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482110	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18512400-18518400	Weak transcription	NHLF	lung
3	chr10:18514000-18518800	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
6	chr10:18514400-18518200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
9	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:18514600-18519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18515400-18522000	Weak transcription	Ovary	ovary
12	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
14	chr10:18517000-18517600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:18517000-18518800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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