Variant report

Variant	rs12782239
Chromosome Location	chr10:56064229-56064230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:56063971..56064546-chr4:85391561..85392244,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11815598	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1592179	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1935473	0.84[ASN][1000 genomes]
rs1935475	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2105342	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2384450	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2384451	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2384452	0.84[ASN][1000 genomes]
rs2384453	0.84[ASN][1000 genomes]
rs2891517	0.84[ASN][1000 genomes]
rs2891518	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4592338	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4619057	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7071743	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7076720	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7076894	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7077628	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7082643	0.84[ASN][1000 genomes]
rs7094951	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7099113	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs71492603	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56058800-56066400	Weak transcription	H9 Cell Line	embryonic stem cell

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