Variant report

Variant	rs4592338
Chromosome Location	chr10:56098424-56098425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10509012	1.00[CEU][hapmap]
rs11813358	1.00[CEU][hapmap]
rs11815598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12761151	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12764477	1.00[CEU][hapmap]
rs12764651	1.00[CEU][hapmap]
rs12764841	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12766319	1.00[CEU][hapmap]
rs12766416	1.00[CEU][hapmap]
rs12767321	1.00[CEU][hapmap]
rs12767540	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap]
rs12769304	1.00[CEU][hapmap]
rs12773722	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12775760	0.88[AMR][1000 genomes]
rs12776029	1.00[CEU][hapmap]
rs12776188	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs12782239	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1342276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1342282	1.00[CEU][hapmap]
rs1361709	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs1361710	1.00[CEU][hapmap]
rs1539319	1.00[CEU][hapmap]
rs1539320	1.00[CEU][hapmap]
rs1592179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906032	1.00[CEU][hapmap]
rs16906069	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17725837	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1935471	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs1935473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970520	1.00[CEU][hapmap]
rs2105342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183974	0.87[GIH][hapmap]
rs2185751	1.00[CEU][hapmap]
rs2244155	1.00[CEU][hapmap]
rs2384450	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2384452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2583027	1.00[CEU][hapmap]
rs2583028	1.00[CEU][hapmap]
rs2583029	1.00[CEU][hapmap]
rs2583031	1.00[CEU][hapmap]
rs2583033	1.00[CEU][hapmap]
rs2583034	1.00[CEU][hapmap]
rs2583035	1.00[CEU][hapmap]
rs2583037	1.00[CEU][hapmap]
rs2795932	1.00[CEU][hapmap]
rs2795934	1.00[CEU][hapmap]
rs2795935	1.00[CEU][hapmap]
rs2795936	1.00[CEU][hapmap]
rs2795938	1.00[CEU][hapmap]
rs2795940	1.00[CEU][hapmap]
rs2891517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36044825	0.88[AMR][1000 genomes]
rs4619057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66737208	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7071743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071949	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71492603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71492607	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7916420	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9416324	1.00[CEU][hapmap]
rs978674	1.00[CEU][hapmap]
rs978677	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467217	chr10:56072949-56104585	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv550952	chr10:56072949-56104585	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv895434	chr10:56076004-56119975	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv895435	chr10:56076975-56108631	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv895436	chr10:56076975-56114857	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56097800-56099000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:56097800-56099000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:56098200-56098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:56098200-56098600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:56098200-56098800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:56098200-56099000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:56098400-56098600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr10:56098400-56099000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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