Variant report

Variant	rs12776029
Chromosome Location	chr10:56071780-56071781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509012	1.00[CEU][hapmap]
rs10763071	1.00[CHB][hapmap]
rs10763072	1.00[CHB][hapmap]
rs10825320	1.00[CHB][hapmap]
rs11813358	1.00[CEU][hapmap]
rs12761151	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12764477	1.00[CEU][hapmap]
rs12764651	1.00[CEU][hapmap]
rs12764841	1.00[CEU][hapmap]
rs12766319	1.00[CEU][hapmap]
rs12766416	1.00[CEU][hapmap]
rs12767321	1.00[CEU][hapmap]
rs12767540	1.00[CEU][hapmap]
rs12769304	1.00[CEU][hapmap]
rs12773722	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12775760	0.83[AMR][1000 genomes]
rs12776188	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1342276	1.00[CEU][hapmap]
rs1342282	1.00[CEU][hapmap]
rs1361709	1.00[CEU][hapmap]
rs1361710	1.00[CEU][hapmap]
rs1539319	1.00[CEU][hapmap]
rs1539320	1.00[CEU][hapmap]
rs16906032	1.00[CEU][hapmap]
rs16906069	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs17725837	1.00[CEU][hapmap]
rs1819727	1.00[CHB][hapmap]
rs1935471	1.00[CEU][hapmap]
rs1970520	1.00[CEU][hapmap]
rs2000195	1.00[CHB][hapmap]
rs2050998	1.00[CHB][hapmap]
rs2185751	1.00[CEU][hapmap]
rs2244155	1.00[CEU][hapmap]
rs2583027	1.00[CEU][hapmap]
rs2583028	1.00[CEU][hapmap]
rs2583029	1.00[CEU][hapmap]
rs2583031	1.00[CEU][hapmap]
rs2583033	1.00[CEU][hapmap]
rs2583034	1.00[CEU][hapmap]
rs2583035	1.00[CEU][hapmap]
rs2583037	1.00[CEU][hapmap]
rs2795932	1.00[CEU][hapmap]
rs2795934	1.00[CEU][hapmap]
rs2795935	1.00[CEU][hapmap]
rs2795936	1.00[CEU][hapmap]
rs2795938	1.00[CEU][hapmap]
rs2795940	1.00[CEU][hapmap]
rs2891517	1.00[CEU][hapmap]
rs36044825	0.83[AMR][1000 genomes]
rs4592338	1.00[CEU][hapmap]
rs4619057	1.00[CEU][hapmap]
rs7071949	0.83[AMR][1000 genomes]
rs7076720	1.00[CEU][hapmap]
rs7076894	1.00[CEU][hapmap]
rs7082643	1.00[CEU][hapmap]
rs71492607	0.83[AMR][1000 genomes]
rs7916420	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9416324	1.00[CEU][hapmap]
rs978674	1.00[CEU][hapmap]
rs978677	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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