Variant report

Variant	rs12773722
Chromosome Location	chr10:56157880-56157881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10509012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap]
rs11813358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs11815598	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12761151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12764477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs12764651	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12764841	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12766319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap]
rs12766416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs12767321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs12767540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs12769304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap]
rs12775760	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12776029	1.00[CEU][hapmap]
rs12776188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1342276	1.00[CEU][hapmap]
rs1342282	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1361709	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1361710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs1539319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1539320	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1592179	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16906032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap]
rs16906069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725837	1.00[CEU][hapmap]
rs1935471	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1935473	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1935475	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1970520	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2105342	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2183974	0.86[YRI][hapmap]
rs2185751	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2244155	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2384450	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2384451	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2384452	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2384453	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2583027	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583028	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583031	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583033	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583034	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583035	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2583037	1.00[CEU][hapmap]
rs2795932	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2795934	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2795935	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2795936	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2795938	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2795940	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2891517	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2891518	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36044825	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4592338	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4619057	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66737208	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071743	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7071949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076720	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076894	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7077628	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7082643	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7094951	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7099113	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71492603	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71492607	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9416324	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs978674	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs978677	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56156800-56160600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:56157200-56162200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:56157800-56158000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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