Variant report

Variant	rs2050998
Chromosome Location	chr10:56157164-56157165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10490982	1.00[JPT][hapmap]
rs10509009	1.00[JPT][hapmap]
rs10509010	1.00[JPT][hapmap]
rs10733929	1.00[JPT][hapmap]
rs10733930	1.00[JPT][hapmap]
rs10733931	1.00[JPT][hapmap]
rs10740580	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10740581	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10740582	1.00[JPT][hapmap]
rs10763102	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10763103	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10763104	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10763105	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10763106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763107	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825299	0.85[CEU][hapmap]
rs10825310	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10825311	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10825312	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10825314	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10825315	0.86[CEU][hapmap]
rs10825317	1.00[JPT][hapmap]
rs10825320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004206	1.00[JPT][hapmap]
rs11004209	1.00[JPT][hapmap]
rs11004210	1.00[JPT][hapmap]
rs11004217	0.93[CEU][hapmap]
rs11004252	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs11004264	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12776029	1.00[CHB][hapmap]
rs12778129	0.93[CEU][hapmap]
rs1342290	1.00[JPT][hapmap]
rs1539318	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1573045	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs17654584	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs17727669	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs17728099	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1819727	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1819729	1.00[JPT][hapmap]
rs1935466	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs1935467	1.00[JPT][hapmap]
rs2000195	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs4316429	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs4548533	1.00[JPT][hapmap]
rs4639844	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs4935512	1.00[JPT][hapmap]
rs4935513	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7075321	1.00[JPT][hapmap]
rs7092207	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7092779	1.00[JPT][hapmap]
rs7342012	1.00[JPT][hapmap]
rs7895226	1.00[JPT][hapmap]
rs7911706	0.86[CEU][hapmap]
rs7922308	1.00[JPT][hapmap]
rs7922953	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56155200-56157200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr10:56155200-56157200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:56155200-56157800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:56155800-56157200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:56156600-56157200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:56156800-56160600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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