Variant report

Variant	rs10825299
Chromosome Location	chr10:56062317-56062318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10430538	1.00[JPT][hapmap]
rs10825298	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10825320	0.84[CEU][hapmap]
rs10825325	1.00[JPT][hapmap]
rs11004217	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11004279	1.00[JPT][hapmap]
rs11004295	1.00[JPT][hapmap]
rs11819101	1.00[CHB][hapmap]
rs1219860	1.00[JPT][hapmap]
rs1219861	1.00[JPT][hapmap]
rs12778129	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1612430	1.00[JPT][hapmap]
rs16906104	1.00[JPT][hapmap]
rs1758833	1.00[JPT][hapmap]
rs17725837	1.00[CHB][hapmap]
rs1774653	1.00[JPT][hapmap]
rs1774662	1.00[JPT][hapmap]
rs1819727	0.84[TSI][hapmap]
rs2050998	0.85[CEU][hapmap]
rs2153820	1.00[JPT][hapmap]
rs4287259	1.00[JPT][hapmap]
rs4287260	1.00[JPT][hapmap]
rs4481936	1.00[JPT][hapmap]
rs4483501	1.00[JPT][hapmap]
rs4935109	1.00[JPT][hapmap]
rs4935515	1.00[JPT][hapmap]
rs4935516	1.00[JPT][hapmap]
rs4935519	1.00[JPT][hapmap]
rs7911593	1.00[JPT][hapmap]
rs7911706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7918858	1.00[JPT][hapmap]
rs9416306	0.82[CHB][hapmap]
rs995664	1.00[JPT][hapmap]
rs995665	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56058800-56066400	Weak transcription	H9 Cell Line	embryonic stem cell

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