Variant report

Variant	rs10825325
Chromosome Location	chr10:56170639-56170640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10430538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10430539	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733929	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs10733930	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10733931	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10740582	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10740583	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763107	0.86[CEU][hapmap]
rs10825299	1.00[JPT][hapmap]
rs10825317	0.86[CEU][hapmap]
rs11004217	1.00[JPT][hapmap]
rs11004279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004292	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004298	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1219860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1219861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12778129	1.00[JPT][hapmap]
rs1612430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs16906104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1758819	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1758824	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1758828	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1758829	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1758833	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1774650	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774651	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774652	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1819729	0.85[CEU][hapmap]
rs1935467	0.86[CEU][hapmap]
rs2000195	0.82[CEU][hapmap]
rs2153820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4287259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4287260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4481936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4483501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4935109	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4935515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs4935516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7092779	0.85[CEU][hapmap]
rs7895226	0.85[CEU][hapmap]
rs7911593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7911706	1.00[JPT][hapmap]
rs7918858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7923527	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415319	0.82[EUR][1000 genomes]
rs9416306	0.82[JPT][hapmap]
rs995664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs995665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56169800-56170800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:56170000-56171000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:56170000-56171000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:56170400-56171000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:56170600-56171000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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