Variant report

Variant	rs7092779
Chromosome Location	chr10:56147975-56147976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10430538	0.85[CEU][hapmap]
rs10490982	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10509009	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10509010	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10733929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733930	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733931	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740580	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10740581	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740582	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763102	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs10763103	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10763104	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10763105	0.90[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs10763107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825310	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825311	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825312	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825314	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825315	0.91[CEU][hapmap]
rs10825317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10825320	1.00[JPT][hapmap]
rs10825325	0.85[CEU][hapmap]
rs11004202	0.91[TSI][hapmap]
rs11004206	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11004209	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs11004210	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs11004213	0.86[AMR][1000 genomes]
rs11004245	0.93[AMR][1000 genomes]
rs11004252	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004264	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004279	0.85[CEU][hapmap]
rs11004295	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs11817933	1.00[CHB][hapmap]
rs1219860	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs1219861	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs1342290	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes]
rs1539318	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1573045	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1612430	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs16906104	0.85[CEU][hapmap]
rs17654584	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17658102	1.00[CHB][hapmap]
rs17727669	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17728099	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17730760	1.00[CHB][hapmap]
rs1774653	0.85[CEU][hapmap]
rs1774662	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[TSI][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1935466	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs2050998	1.00[JPT][hapmap]
rs2153820	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs3858270	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4287259	0.85[CEU][hapmap]
rs4287260	0.85[CEU][hapmap]
rs4316429	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs4481936	0.85[CEU][hapmap]
rs4483501	0.85[CEU][hapmap]
rs4548533	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4639844	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs4935109	0.85[CEU][hapmap]
rs4935512	1.00[JPT][hapmap]
rs4935513	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4935515	0.85[CEU][hapmap]
rs4935516	0.85[CEU][hapmap]
rs4935519	0.85[CEU][hapmap]
rs55979472	0.86[AMR][1000 genomes]
rs7075321	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092207	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72801247	0.93[AMR][1000 genomes]
rs7342012	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7895226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7911487	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7911593	0.85[CEU][hapmap]
rs7918858	0.85[CEU][hapmap]
rs7922308	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7922953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs995664	0.85[CEU][hapmap];0.80[TSI][hapmap]
rs995665	0.85[CEU][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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