Variant report
| Variant | rs17658102 |
|---|---|
| Chromosome Location | chr10:56322477-56322478 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10733929 | 1.00[CHB][hapmap] |
| rs10733930 | 1.00[CHB][hapmap] |
| rs10733931 | 1.00[CHB][hapmap] |
| rs10740580 | 1.00[CHB][hapmap] |
| rs10740581 | 1.00[CHB][hapmap] |
| rs10740582 | 1.00[CHB][hapmap] |
| rs10763102 | 1.00[CHB][hapmap] |
| rs10763103 | 1.00[CHB][hapmap] |
| rs10763104 | 1.00[CHB][hapmap] |
| rs10763105 | 1.00[CHB][hapmap] |
| rs10763107 | 1.00[CHB][hapmap] |
| rs10825310 | 1.00[CHB][hapmap] |
| rs10825311 | 1.00[CHB][hapmap] |
| rs10825312 | 1.00[CHB][hapmap] |
| rs10825314 | 1.00[CHB][hapmap] |
| rs10825317 | 1.00[CHB][hapmap] |
| rs11004264 | 1.00[CHB][hapmap] |
| rs11817933 | 1.00[CHB][hapmap] |
| rs1539318 | 1.00[CHB][hapmap] |
| rs1573045 | 1.00[CHB][hapmap] |
| rs17654584 | 1.00[CHB][hapmap] |
| rs17728099 | 1.00[CHB][hapmap] |
| rs17730760 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap] |
| rs1819729 | 1.00[CHB][hapmap] |
| rs1935466 | 1.00[CHB][hapmap] |
| rs1935467 | 1.00[CHB][hapmap] |
| rs2384470 | 0.85[YRI][hapmap] |
| rs4316429 | 1.00[CHB][hapmap] |
| rs4639844 | 1.00[CHB][hapmap] |
| rs4935513 | 1.00[CHB][hapmap] |
| rs7075321 | 1.00[CHB][hapmap] |
| rs7092207 | 1.00[CHB][hapmap] |
| rs7092779 | 1.00[CHB][hapmap] |
| rs7099733 | 1.00[CHD][hapmap] |
| rs7895226 | 1.00[CHB][hapmap] |
| rs7922308 | 1.00[CHB][hapmap] |
| rs7922953 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050405 | chr10:56224676-56800009 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv540635 | chr10:56224676-56800009 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv895444 | chr10:56254206-56354118 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv6709 | chr10:56303925-56348716 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv933410 | chr10:56319433-56713977 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv550968 | chr10:56319852-56343345 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv467228 | chr10:56322477-56343345 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv550969 | chr10:56322477-56343345 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17658102 | IPMK | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
