Variant report

Variant	rs11817933
Chromosome Location	chr10:56209496-56209497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10733929	1.00[CHB][hapmap]
rs10733930	1.00[CHB][hapmap]
rs10733931	1.00[CHB][hapmap]
rs10740580	1.00[CHB][hapmap]
rs10740581	1.00[CHB][hapmap]
rs10740582	1.00[CHB][hapmap]
rs10763102	1.00[CHB][hapmap]
rs10763103	1.00[CHB][hapmap]
rs10763104	1.00[CHB][hapmap]
rs10763105	1.00[CHB][hapmap]
rs10763107	1.00[CHB][hapmap]
rs10825310	1.00[CHB][hapmap]
rs10825311	1.00[CHB][hapmap]
rs10825312	1.00[CHB][hapmap]
rs10825314	1.00[CHB][hapmap]
rs10825317	1.00[CHB][hapmap]
rs11004252	1.00[CHB][hapmap]
rs11004264	1.00[CHB][hapmap]
rs1342290	1.00[CHB][hapmap]
rs1539318	1.00[CHB][hapmap]
rs1573045	1.00[CHB][hapmap]
rs17654584	1.00[CHB][hapmap]
rs17658102	1.00[CHB][hapmap]
rs17727669	1.00[CHB][hapmap]
rs17728099	1.00[CHB][hapmap]
rs17730760	1.00[CHB][hapmap]
rs1819729	1.00[CHB][hapmap]
rs1935466	1.00[CHB][hapmap]
rs1935467	1.00[CHB][hapmap]
rs4316429	1.00[CHB][hapmap]
rs4548533	1.00[CHB][hapmap]
rs4639844	1.00[CHB][hapmap]
rs4935513	1.00[CHB][hapmap]
rs7075321	1.00[CHB][hapmap]
rs7092207	1.00[CHB][hapmap]
rs7092779	1.00[CHB][hapmap]
rs7342012	1.00[CHB][hapmap]
rs7895226	1.00[CHB][hapmap]
rs7922308	1.00[CHB][hapmap]
rs7922953	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56205200-56210600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:56206800-56210800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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