Variant report

Variant	rs1342290
Chromosome Location	chr10:56097420-56097421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10490982	1.00[JPT][hapmap]
rs10509009	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10509010	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10733929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740580	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740581	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763102	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10763103	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10763104	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763105	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763107	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825310	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825311	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825312	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825315	0.91[CEU][hapmap]
rs10825317	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825320	1.00[JPT][hapmap]
rs11004206	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11004209	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11004213	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004252	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004264	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11817933	1.00[CHB][hapmap]
rs1539318	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1573045	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17654584	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17727669	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17728099	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1774662	0.89[YRI][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935466	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935467	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs2050998	1.00[JPT][hapmap]
rs3858270	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4316429	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4548533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4639844	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4935512	1.00[JPT][hapmap]
rs4935513	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55979472	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7075321	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092207	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092779	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72801247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7895226	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7911487	1.00[ASN][1000 genomes]
rs7922308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922953	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1048014	chr10:56053413-56104109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv467217	chr10:56072949-56104585	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv550952	chr10:56072949-56104585	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv895434	chr10:56076004-56119975	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv895435	chr10:56076975-56108631	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv895436	chr10:56076975-56114857	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56096000-56097800	Weak transcription	H1 Cell Line	embryonic stem cell

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