Variant report

Variant	rs17654584
Chromosome Location	chr10:56123140-56123141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10490982	1.00[JPT][hapmap]
rs10509009	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10509010	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10733929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10733931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740581	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763107	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825315	1.00[CEU][hapmap]
rs10825317	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825320	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11004206	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs11004209	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004210	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11004213	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004245	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11004264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004279	0.94[YRI][hapmap]
rs11817933	1.00[CHB][hapmap]
rs1342290	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1573045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17658102	1.00[CHB][hapmap]
rs17727669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs17728099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17730760	1.00[CHB][hapmap]
rs1774662	0.84[YRI][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935467	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs2050998	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs3858270	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4316429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548533	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4639844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935512	1.00[JPT][hapmap]
rs4935513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935516	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs55979472	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7075321	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7092207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092779	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72801247	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342012	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7895226	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7911487	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922953	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv895437	chr10:56083891-56132046	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv895438	chr10:56083891-56146761	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv550953	chr10:56084933-56126202	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv467218	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
12	nsv550954	chr10:56084933-56132046	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv550955	chr10:56084933-56146761	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv895439	chr10:56084933-56146761	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv467219	chr10:56087423-56126202	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv550956	chr10:56087423-56126202	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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