Variant report

Variant	rs10509009
Chromosome Location	chr10:56044339-56044340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10490982	1.00[JPT][hapmap]
rs10509010	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10733929	1.00[JPT][hapmap]
rs10733930	1.00[JPT][hapmap]
rs10733931	1.00[JPT][hapmap]
rs10740580	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10740581	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10740582	1.00[JPT][hapmap]
rs10763102	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10763103	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10763104	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs10763105	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs10763107	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10825310	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs10825311	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10825312	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs10825314	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10825315	0.92[CEU][hapmap]
rs10825317	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10825320	1.00[JPT][hapmap]
rs11004206	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11004209	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004213	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004245	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004252	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs11004264	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs1342290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1539318	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs1573045	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17654584	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17727669	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17728099	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	1.00[JPT][hapmap]
rs1935466	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs1935467	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs2050998	1.00[JPT][hapmap]
rs3858270	0.89[ASN][1000 genomes]
rs4316429	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4548533	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4639844	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4935512	1.00[JPT][hapmap]
rs4935513	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs55979472	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075321	1.00[JPT][hapmap]
rs7092207	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs7092779	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs72801247	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7342012	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7895226	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs7911487	0.89[ASN][1000 genomes]
rs7922308	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7922953	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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