Variant report

Variant	rs3858270
Chromosome Location	chr10:56153035-56153036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10430539	0.82[EUR][1000 genomes]
rs10740583	0.82[EUR][1000 genomes]
rs10763102	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763103	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004209	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004210	0.89[ASN][1000 genomes]
rs11004213	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11004245	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11004292	0.81[EUR][1000 genomes]
rs1342290	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1758819	0.81[EUR][1000 genomes]
rs1758828	0.81[EUR][1000 genomes]
rs1758829	0.81[EUR][1000 genomes]
rs1774650	0.81[EUR][1000 genomes]
rs1774651	0.81[EUR][1000 genomes]
rs1774652	0.81[EUR][1000 genomes]
rs1774653	0.81[EUR][1000 genomes]
rs4316429	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639844	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4935516	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55979472	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72801247	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7911487	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923527	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56153000-56153600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:56153000-56153800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:56153000-56154200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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