Variant report

Variant	rs10733929
Chromosome Location	chr10:56168578-56168579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10430538	0.88[CEU][hapmap]
rs10430539	0.95[AFR][1000 genomes]
rs10490982	1.00[JPT][hapmap]
rs10509009	1.00[JPT][hapmap]
rs10509010	1.00[JPT][hapmap]
rs10733930	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10733931	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10740580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10740582	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10740583	0.95[AFR][1000 genomes]
rs10763102	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10763103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10763104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763105	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763107	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825312	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825320	1.00[JPT][hapmap]
rs10825325	0.88[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11004206	1.00[JPT][hapmap]
rs11004209	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11004210	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11004213	0.89[ASN][1000 genomes]
rs11004245	1.00[ASN][1000 genomes]
rs11004252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004264	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11004279	0.88[CEU][hapmap]
rs11004295	0.81[CEU][hapmap]
rs11817933	1.00[CHB][hapmap]
rs1219860	0.81[CEU][hapmap]
rs1219861	0.81[CEU][hapmap]
rs1342290	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1539318	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1573045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1612430	0.82[CEU][hapmap];0.93[YRI][hapmap]
rs16906104	0.82[CEU][hapmap]
rs1758819	0.86[AFR][1000 genomes]
rs1758824	0.86[AFR][1000 genomes]
rs1758828	0.84[AFR][1000 genomes]
rs17654584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17658102	1.00[CHB][hapmap]
rs17727669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17728099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17730760	1.00[CHB][hapmap]
rs1774650	0.86[AFR][1000 genomes]
rs1774651	0.86[AFR][1000 genomes]
rs1774652	0.84[AFR][1000 genomes]
rs1774653	0.82[CEU][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes]
rs1774662	0.81[CEU][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[JPT][hapmap]
rs2050998	1.00[JPT][hapmap]
rs2153820	0.81[CEU][hapmap];0.96[YRI][hapmap]
rs3858270	1.00[ASN][1000 genomes]
rs4287259	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs4287260	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4316429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4481936	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4483501	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4548533	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4639844	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4935109	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs4935512	1.00[JPT][hapmap]
rs4935513	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935515	0.82[CEU][hapmap];0.97[YRI][hapmap]
rs4935516	0.82[CEU][hapmap]
rs4935519	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs55979472	0.89[ASN][1000 genomes]
rs7075321	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092207	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7092779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72801247	1.00[ASN][1000 genomes]
rs7342012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7895226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7911487	1.00[ASN][1000 genomes]
rs7911593	0.81[CEU][hapmap];0.96[YRI][hapmap]
rs7918858	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs7922308	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7922953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7923527	0.84[AFR][1000 genomes]
rs995664	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs995665	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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