Variant report

Variant	rs10490982
Chromosome Location	chr10:56016131-56016132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10509006	1.00[CHB][hapmap]
rs10509009	1.00[JPT][hapmap]
rs10509010	1.00[JPT][hapmap]
rs10733929	1.00[JPT][hapmap]
rs10733930	1.00[JPT][hapmap]
rs10733931	1.00[JPT][hapmap]
rs10740573	1.00[CHB][hapmap]
rs10740580	1.00[JPT][hapmap]
rs10740581	1.00[JPT][hapmap]
rs10740582	1.00[JPT][hapmap]
rs10763071	1.00[CHB][hapmap]
rs10763072	1.00[CHB][hapmap]
rs10763102	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10763103	1.00[JPT][hapmap]
rs10763104	1.00[JPT][hapmap]
rs10763105	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10763107	1.00[JPT][hapmap]
rs10825240	1.00[CHB][hapmap]
rs10825246	1.00[CHB][hapmap]
rs10825247	1.00[CHB][hapmap]
rs10825248	1.00[CHB][hapmap]
rs10825310	1.00[JPT][hapmap]
rs10825311	1.00[JPT][hapmap]
rs10825312	1.00[JPT][hapmap]
rs10825314	1.00[JPT][hapmap]
rs10825317	1.00[JPT][hapmap]
rs10825320	1.00[JPT][hapmap]
rs11004085	1.00[CHB][hapmap]
rs11004087	1.00[CHB][hapmap]
rs11004108	1.00[CHB][hapmap]
rs11004113	1.00[CHB][hapmap]
rs11004206	1.00[JPT][hapmap]
rs11004209	1.00[JPT][hapmap]
rs11004210	1.00[JPT][hapmap]
rs11004252	1.00[JPT][hapmap]
rs11004264	1.00[JPT][hapmap]
rs12251774	1.00[CHB][hapmap]
rs1342290	1.00[JPT][hapmap]
rs1539318	1.00[JPT][hapmap]
rs1573045	1.00[JPT][hapmap]
rs16905592	1.00[CHB][hapmap]
rs17611377	1.00[CHB][hapmap];0.80[YRI][hapmap]
rs17654584	1.00[JPT][hapmap]
rs17727669	1.00[JPT][hapmap]
rs17728099	1.00[JPT][hapmap]
rs1819727	1.00[JPT][hapmap]
rs1819729	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1935466	1.00[JPT][hapmap]
rs1935467	1.00[JPT][hapmap]
rs2000195	1.00[JPT][hapmap]
rs2043994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050998	1.00[JPT][hapmap]
rs4007263	1.00[CHB][hapmap]
rs4285791	1.00[CHB][hapmap]
rs4316429	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4332430	1.00[CHB][hapmap]
rs4347291	1.00[CHB][hapmap]
rs4415663	1.00[CHB][hapmap]
rs4539220	1.00[CHB][hapmap]
rs4548533	1.00[JPT][hapmap]
rs4589198	1.00[CHB][hapmap]
rs4595452	1.00[CHB][hapmap]
rs4601672	1.00[CHB][hapmap]
rs4639844	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4935499	1.00[CHB][hapmap]
rs4935512	1.00[JPT][hapmap]
rs4935513	1.00[JPT][hapmap]
rs6481062	1.00[CHB][hapmap]
rs6481063	1.00[CHB][hapmap]
rs7074276	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7074588	1.00[CHB][hapmap]
rs7074636	1.00[CHB][hapmap]
rs7075321	1.00[JPT][hapmap]
rs7079459	1.00[CHB][hapmap]
rs7092207	1.00[JPT][hapmap]
rs7092779	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7093558	1.00[CHB][hapmap]
rs7095441	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7100992	1.00[CHB][hapmap]
rs7342012	1.00[JPT][hapmap]
rs7895226	1.00[JPT][hapmap]
rs7900875	1.00[CHB][hapmap]
rs7902776	1.00[CHB][hapmap]
rs7905574	1.00[CHB][hapmap]
rs7914232	1.00[CHB][hapmap]
rs7922308	1.00[JPT][hapmap]
rs7922953	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv467215	chr10:55943184-56019194	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv550951	chr10:55943184-56019194	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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