Variant report

Variant	rs10825240
Chromosome Location	chr10:55880792-55880793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10490982	1.00[CHB][hapmap]
rs10509006	1.00[CHB][hapmap]
rs10740573	1.00[CHB][hapmap]
rs10763071	1.00[CHB][hapmap]
rs10763072	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10825241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825246	1.00[CHB][hapmap]
rs10825247	1.00[CHB][hapmap]
rs10825248	1.00[CHB][hapmap]
rs11004085	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs11004087	1.00[CHB][hapmap]
rs11004108	1.00[CHB][hapmap]
rs11004113	1.00[CHB][hapmap]
rs11510900	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11597275	1.00[CHB][hapmap]
rs12251774	1.00[CHB][hapmap]
rs16905592	1.00[CHB][hapmap]
rs17611377	1.00[CHB][hapmap]
rs2043994	1.00[CHB][hapmap]
rs4007261	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4007263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4272708	1.00[ASN][1000 genomes]
rs4278429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285791	1.00[CHB][hapmap]
rs4332430	1.00[CHB][hapmap]
rs4347291	1.00[CHB][hapmap]
rs4415663	1.00[CHB][hapmap]
rs4539220	1.00[CHB][hapmap]
rs4548533	1.00[CHB][hapmap]
rs4589198	1.00[CHB][hapmap]
rs4595452	1.00[CHB][hapmap]
rs4601672	1.00[CHB][hapmap]
rs4935499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481062	1.00[CHB][hapmap]
rs6481063	1.00[CHB][hapmap]
rs7074276	1.00[CHB][hapmap]
rs7074447	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs7074588	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7074636	1.00[CHB][hapmap]
rs7079459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7093558	1.00[CHB][hapmap]
rs7095441	1.00[CHB][hapmap]
rs7100992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900875	1.00[CHB][hapmap]
rs7902776	1.00[CHB][hapmap]
rs7905574	1.00[CHB][hapmap]
rs7914232	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55880400-55881000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:55880600-55880800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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