Variant report

Variant	rs4601672
Chromosome Location	chr10:55919318-55919319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10490982	1.00[CHB][hapmap]
rs10509006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740573	1.00[CHB][hapmap]
rs10763071	1.00[CHB][hapmap]
rs10763072	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10825240	1.00[CHB][hapmap]
rs10825246	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10825247	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10825248	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11004085	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11004087	1.00[CHB][hapmap]
rs11004108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11004113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11516669	1.00[ASN][1000 genomes]
rs12251774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905592	1.00[CHB][hapmap]
rs17611377	1.00[CHB][hapmap]
rs2043994	1.00[CHB][hapmap]
rs35085833	1.00[ASN][1000 genomes]
rs4007244	1.00[ASN][1000 genomes]
rs4007263	1.00[CHB][hapmap]
rs4285791	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4332430	1.00[CHB][hapmap]
rs4347291	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs4415663	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4480446	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539220	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4589198	1.00[CHB][hapmap]
rs4595452	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4935499	1.00[CHB][hapmap]
rs59762003	0.83[EUR][1000 genomes]
rs6481062	1.00[CHB][hapmap]
rs6481063	1.00[CHB][hapmap]
rs7074276	1.00[CHB][hapmap]
rs7074588	1.00[CHB][hapmap]
rs7074636	1.00[CHB][hapmap]
rs7079459	1.00[CHB][hapmap]
rs7093558	1.00[CHB][hapmap]
rs7095441	1.00[CHB][hapmap]
rs7100992	1.00[CHB][hapmap]
rs72797074	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797075	0.91[EUR][1000 genomes]
rs7900875	1.00[CHB][hapmap]
rs7900941	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902776	1.00[CHB][hapmap]
rs7903275	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905574	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7914232	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895431	chr10:55898144-55955444	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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