Variant report
| Variant | rs7900875 |
|---|---|
| Chromosome Location | chr10:55889344-55889345 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 10:55597627-55602376..10:55882057-55892580 | GM12878 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10490982 | 1.00[CHB][hapmap] |
| rs10509006 | 1.00[CHB][hapmap] |
| rs10740573 | 1.00[CHB][hapmap] |
| rs10763071 | 1.00[CHB][hapmap] |
| rs10763072 | 1.00[CHB][hapmap] |
| rs10825240 | 1.00[CHB][hapmap] |
| rs10825246 | 1.00[CHB][hapmap] |
| rs10825247 | 1.00[CHB][hapmap] |
| rs10825248 | 1.00[CHB][hapmap] |
| rs11004085 | 1.00[CHB][hapmap] |
| rs11004087 | 1.00[CHB][hapmap] |
| rs11004108 | 1.00[CHB][hapmap] |
| rs11004113 | 1.00[CHB][hapmap] |
| rs12251774 | 1.00[CHB][hapmap] |
| rs16905592 | 1.00[CHB][hapmap] |
| rs17611377 | 1.00[CHB][hapmap] |
| rs2043994 | 1.00[CHB][hapmap] |
| rs4007263 | 1.00[CHB][hapmap] |
| rs4285791 | 1.00[CHB][hapmap] |
| rs4332430 | 1.00[CHB][hapmap] |
| rs4347291 | 1.00[CHB][hapmap] |
| rs4415663 | 1.00[CHB][hapmap] |
| rs4539220 | 1.00[CHB][hapmap] |
| rs4589198 | 1.00[CHB][hapmap] |
| rs4595452 | 1.00[CHB][hapmap] |
| rs4601672 | 1.00[CHB][hapmap] |
| rs4935499 | 1.00[CHB][hapmap] |
| rs6481062 | 1.00[CHB][hapmap] |
| rs6481063 | 1.00[CHB][hapmap] |
| rs7074276 | 1.00[CHB][hapmap] |
| rs7074588 | 1.00[CHB][hapmap] |
| rs7074636 | 1.00[CHB][hapmap] |
| rs7079459 | 1.00[CHB][hapmap] |
| rs7093558 | 1.00[CHB][hapmap] |
| rs7095441 | 1.00[CHB][hapmap] |
| rs7100992 | 1.00[CHB][hapmap] |
| rs7902776 | 1.00[CHB][hapmap] |
| rs7905574 | 1.00[CHB][hapmap] |
| rs7914232 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv948730 | chr10:55845301-56093271 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1035173 | chr10:55847066-56005288 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv467214 | chr10:55881720-55948714 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv430232 | chr10:55883194-56027294 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
