Variant report

Variant	rs1774662
Chromosome Location	chr10:56182439-56182440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10430538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10430539	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509010	0.84[YRI][hapmap]
rs10733929	0.81[CEU][hapmap]
rs10733930	1.00[CEU][hapmap]
rs10733931	1.00[CEU][hapmap]
rs10740582	1.00[CEU][hapmap]
rs10740583	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10763105	0.91[ASW][hapmap];0.86[TSI][hapmap]
rs10763107	0.85[CEU][hapmap]
rs10825299	1.00[JPT][hapmap]
rs10825317	0.85[CEU][hapmap]
rs10825325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11004202	0.82[TSI][hapmap]
rs11004209	0.91[YRI][hapmap]
rs11004217	1.00[JPT][hapmap]
rs11004252	0.92[YRI][hapmap]
rs11004279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11004292	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11004295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11004298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1219860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1219861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12778129	1.00[JPT][hapmap]
rs1342290	0.89[YRI][hapmap]
rs1539318	1.00[ASW][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap]
rs1612430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16906104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1758819	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1758824	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1758828	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1758829	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1758833	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17654584	0.84[YRI][hapmap]
rs17727669	0.86[YRI][hapmap]
rs1774650	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1774651	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1774652	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1774653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1819729	1.00[ASW][hapmap];0.91[TSI][hapmap]
rs1935467	0.85[CEU][hapmap]
rs2000195	0.87[CEU][hapmap]
rs2153820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4287259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4287260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4481936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4483501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935109	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs4935515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4935516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4935519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7075321	0.92[YRI][hapmap]
rs7092779	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[TSI][hapmap]
rs7342012	0.92[YRI][hapmap]
rs7895226	0.85[CEU][hapmap]
rs7911593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs7911706	1.00[JPT][hapmap]
rs7918858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7922308	0.86[YRI][hapmap]
rs7923527	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9415319	0.87[EUR][1000 genomes]
rs995664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs995665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3449217	chr10:56180396-56182869	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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