Variant report

Variant	rs12787116
Chromosome Location	chr11:72969971-72969972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72968010..72971100-chr11:72972272..72977350,4	MCF-7	breast:
2	chr11:72969464..72972035-chr11:72974532..72976271,2	K562	blood:
3	chr11:72953671..72955860-chr11:72968822..72970580,2	K562	blood:
4	chr11:72968142..72972004-chr11:72979481..72982441,3	MCF-7	breast:
5	chr11:72969879..72972349-chr11:72976555..72979179,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-P2RY6-1	chr11:72969046-72970234	XLOC_009208

No data

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12786475	0.85[EUR][1000 genomes]
rs61893753	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61893754	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71466357	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:72966800-72970000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:72966800-72971400	Enhancers	Placenta	Placenta
4	chr11:72967000-72970800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:72967200-72970200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:72967800-72970000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:72967800-72971400	Enhancers	Spleen	Spleen
8	chr11:72968000-72971400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:72968400-72970000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:72968400-72970000	Enhancers	Fetal Muscle Leg	muscle
11	chr11:72968400-72970000	Enhancers	Hela-S3	cervix
12	chr11:72968600-72970000	Enhancers	Ovary	ovary
13	chr11:72968800-72970000	Enhancers	Fetal Muscle Trunk	muscle
14	chr11:72968800-72971000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:72969000-72970000	Enhancers	A549	lung
16	chr11:72969000-72970200	Enhancers	NHLF	lung
17	chr11:72969200-72970000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:72969200-72970000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:72969200-72970000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:72969200-72970000	Enhancers	HSMMtube	muscle
21	chr11:72969200-72970200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:72969200-72970200	Enhancers	Osteobl	bone
23	chr11:72969400-72970200	Enhancers	NHDF-Ad	bronchial
24	chr11:72969400-72974200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:72969600-72970200	Enhancers	HSMM	muscle
26	chr11:72969600-72974400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:72969600-72975400	Weak transcription	Psoas Muscle	Psoas
28	chr11:72969600-72975400	Weak transcription	HMEC	breast
29	chr11:72969800-72970800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:72969800-72971200	Weak transcription	Left Ventricle	heart
31	chr11:72969800-72973800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:72969800-72974000	Weak transcription	Lung	lung
33	chr11:72969800-72974200	Weak transcription	NH-A	brain
34	chr11:72969800-72975400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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