Variant report

Variant	rs61893754
Chromosome Location	chr11:72967887-72967888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12786475	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12787116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61893753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592518	0.81[AFR][1000 genomes]
rs71466357	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv975393	chr11:72954333-72969696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72954200-72968600	Weak transcription	Left Ventricle	heart
2	chr11:72956600-72968600	Weak transcription	Lung	lung
3	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:72961200-72968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:72964000-72968000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:72964200-72968000	Weak transcription	A549	lung
7	chr11:72964200-72968200	Weak transcription	Fetal Heart	heart
8	chr11:72965600-72968400	Weak transcription	HUVEC	blood vessel
9	chr11:72966600-72968000	Weak transcription	NHEK	skin
10	chr11:72966800-72968400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:72966800-72970000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:72966800-72971400	Enhancers	Placenta	Placenta
13	chr11:72967000-72970800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:72967200-72968600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:72967200-72968600	Enhancers	Osteobl	bone
16	chr11:72967200-72970200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:72967800-72968000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:72967800-72968200	Enhancers	NHDF-Ad	bronchial
19	chr11:72967800-72968600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:72967800-72968600	Enhancers	NH-A	brain
21	chr11:72967800-72969600	Enhancers	HMEC	breast
22	chr11:72967800-72970000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:72967800-72971400	Enhancers	Spleen	Spleen

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