Variant report

Variant	rs12791520
Chromosome Location	chr11:85670847-85670848
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85664911..85667444-chr11:85667862..85673209,4	K562	blood:
2	chr11:85655756..85657493-chr11:85669176..85671069,2	MCF-7	breast:
3	chr11:85670169..85672346-chr11:85673679..85676111,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10501602	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11821654	0.83[EUR][1000 genomes]
rs12787412	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787418	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12787556	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12787654	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12788654	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12788680	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12790526	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12790645	0.82[EUR][1000 genomes]
rs12794211	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12795381	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12795833	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12798065	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12798229	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12798898	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12802064	0.83[EUR][1000 genomes]
rs12802399	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12804751	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12804833	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12805520	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17148704	0.95[ASN][1000 genomes]
rs17745024	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17817600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17817648	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17817931	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17817992	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28365806	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213934	0.82[EUR][1000 genomes]
rs34003294	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34223518	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34332755	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34584483	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34609418	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34631477	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34675784	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34700169	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34766621	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34874199	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34959028	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35206999	0.95[ASN][1000 genomes]
rs35220752	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35519080	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35585561	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35866111	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35992035	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41489645	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55932210	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56094546	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56191920	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66494408	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66802900	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67282763	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67682051	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67719619	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7118279	0.83[EUR][1000 genomes]
rs71465608	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71465611	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85656000-85679800	Weak transcription	Fetal Brain Male	brain
2	chr11:85658600-85673000	Weak transcription	Right Ventricle	heart
3	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
4	chr11:85663400-85692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:85663800-85740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:85664200-85673000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:85664400-85673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:85664400-85678600	Strong transcription	Adipose Nuclei	Adipose
9	chr11:85664400-85687200	Strong transcription	Primary T cells from cord blood	blood
10	chr11:85664400-85693600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:85664400-85699800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:85664400-85726800	Strong transcription	Liver	Liver
13	chr11:85664400-85729000	Strong transcription	Placenta	Placenta
14	chr11:85664600-85673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:85664600-85693200	Strong transcription	Fetal Thymus	thymus
16	chr11:85664600-85730800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:85664800-85674200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:85664800-85678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:85664800-85689400	Strong transcription	Primary B cells from cord blood	blood
20	chr11:85664800-85733000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:85665000-85671000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:85665000-85673600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:85665000-85679200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:85665200-85742600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:85665200-85743000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:85665400-85678800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:85665400-85699800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:85665600-85679600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:85665600-85687800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr11:85665800-85671800	Strong transcription	GM12878-XiMat	blood
31	chr11:85665800-85679600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:85665800-85699600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:85665800-85701200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:85665800-85711400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:85666000-85673200	Weak transcription	Right Atrium	heart
36	chr11:85666000-85677200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:85666000-85679200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:85666000-85735800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:85666200-85671000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:85666400-85673000	Strong transcription	HMEC	breast
41	chr11:85666400-85673000	Strong transcription	K562	blood
42	chr11:85666400-85674200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:85666400-85679000	Strong transcription	Hela-S3	cervix
44	chr11:85666400-85679200	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr11:85666400-85680400	Strong transcription	Dnd41	blood
46	chr11:85666400-85693600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr11:85666600-85671400	Strong transcription	HUVEC	blood vessel
48	chr11:85666600-85672200	Strong transcription	NHEK	skin
49	chr11:85666600-85674000	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:85666600-85680200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links