Variant report

Variant	rs35220752
Chromosome Location	chr11:85652729-85652730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85652279..85653016-chr11:86002549..86003329,2	K562	blood:
2	chr11:85652016..85653035-chr11:85985052..85986168,4	MCF-7	breast:
3	chr11:85652247..85653318-chr11:86002213..86003416,4	MCF-7	breast:
4	chr11:85652479..85653394-chr11:85929080..85930321,4	MCF-7	breast:
5	chr11:85652246..85655077-chr11:85661879..85663462,2	K562	blood:
6	chr11:85650684..85656124-chr11:85659031..85663462,6	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10501602	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234479	0.81[ASN][1000 genomes]
rs11234483	0.81[ASN][1000 genomes]
rs11821654	0.88[EUR][1000 genomes]
rs12283410	0.81[ASN][1000 genomes]
rs12290316	0.81[ASN][1000 genomes]
rs12787412	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12787418	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12787556	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12787654	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12788654	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12788680	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12790526	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12790645	0.86[EUR][1000 genomes]
rs12791520	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12794211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12795381	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12795833	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12798065	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12798229	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12798898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12802064	0.88[EUR][1000 genomes]
rs12802399	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12804751	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12804833	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12805520	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17148704	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17745024	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17817600	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17817648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17817931	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17817992	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28365806	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3213934	0.86[EUR][1000 genomes]
rs34003294	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34223518	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34332755	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34584483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34609418	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34631477	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34675784	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34700169	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34766621	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34874199	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34959028	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35206999	0.84[ASN][1000 genomes]
rs35519080	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35585561	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35866111	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35992035	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41489645	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55932210	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56094546	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56191920	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66494408	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66802900	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66953026	0.81[ASN][1000 genomes]
rs67282763	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67682051	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67719619	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107303	0.81[ASN][1000 genomes]
rs7107455	0.81[ASN][1000 genomes]
rs7118279	0.88[EUR][1000 genomes]
rs71465608	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71465611	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646000-85656600	Weak transcription	Right Atrium	heart
2	chr11:85646600-85660000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85646600-85667400	Weak transcription	Gastric	stomach
4	chr11:85650600-85652800	Weak transcription	K562	blood
5	chr11:85651000-85656600	Weak transcription	HepG2	liver
6	chr11:85651000-85657000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:85651200-85657000	Weak transcription	Liver	Liver
8	chr11:85652200-85652800	Enhancers	Small Intestine	intestine
9	chr11:85652400-85652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:85652600-85652800	Enhancers	Stomach Smooth Muscle	stomach
11	chr11:85652600-85652800	Active TSS	Osteobl	bone
12	chr11:85652600-85653000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:85652600-85653000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:85652600-85653000	Enhancers	Brain Angular Gyrus	brain
15	chr11:85652600-85653000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:85652600-85653000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:85652600-85653000	Enhancers	Left Ventricle	heart
18	chr11:85652600-85653000	Enhancers	Ovary	ovary

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