Variant report

Variant	rs12794929
Chromosome Location	chr11:94369028-94369029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2509327	0.81[ASN][1000 genomes]
rs4550183	0.89[ASN][1000 genomes]
rs508720	0.93[ASN][1000 genomes]
rs511367	0.93[ASN][1000 genomes]
rs628715	0.93[ASN][1000 genomes]
rs631413	0.93[ASN][1000 genomes]
rs658766	0.93[ASN][1000 genomes]
rs7114942	0.91[ASN][1000 genomes]
rs7114944	0.89[ASN][1000 genomes]
rs7115178	0.89[ASN][1000 genomes]
rs7115993	0.91[ASN][1000 genomes]
rs71473209	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521986	chr11:94364361-94369205	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94363800-94371800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:94364200-94369200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:94368000-94374200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:94368200-94370000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:94368400-94369600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:94368400-94371600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:94368400-94374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:94368400-94374000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:94368600-94369600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:94368600-94371200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:94368600-94371200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:94368600-94371800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:94368800-94369200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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