Variant report

Variant	rs628715
Chromosome Location	chr11:94363720-94363721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12794929	0.93[ASN][1000 genomes]
rs2509327	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36017311	0.87[EUR][1000 genomes]
rs4317946	0.86[EUR][1000 genomes]
rs4550183	0.83[ASN][1000 genomes]
rs508720	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600206	0.81[EUR][1000 genomes]
rs607139	0.84[EUR][1000 genomes]
rs631413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67306868	0.87[EUR][1000 genomes]
rs7114942	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114944	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115178	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115993	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71473209	0.93[ASN][1000 genomes]
rs73516322	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs628715	RP11-867G2.6	cis	Nerve Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94357000-94363800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:94359800-94368200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94362800-94363800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:94363000-94363800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr11:94363000-94363800	Enhancers	HUVEC	blood vessel
6	chr11:94363200-94363800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:94363200-94367400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:94363400-94363800	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:94363400-94363800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:94363600-94363800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr11:94363600-94364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:94363600-94368200	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links