Variant report

Variant	rs73516322
Chromosome Location	chr11:94364723-94364724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1939142	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34335788	0.85[ASN][1000 genomes]
rs36017311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317946	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508720	0.86[EUR][1000 genomes]
rs511367	0.87[EUR][1000 genomes]
rs600206	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs607139	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628715	0.87[EUR][1000 genomes]
rs631413	0.87[EUR][1000 genomes]
rs656730	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs658766	0.87[EUR][1000 genomes]
rs67306868	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114942	0.82[EUR][1000 genomes]
rs7114944	0.82[EUR][1000 genomes]
rs7115993	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519248	chr11:94364361-94367296	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv521986	chr11:94364361-94369205	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73516322	RP11-867G2.6	cis	Nerve Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94359800-94368200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:94363200-94367400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:94363600-94368200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:94363800-94368000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:94363800-94368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:94363800-94371800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:94364200-94369200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:94364400-94368000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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