Variant report

Variant	rs600206
Chromosome Location	chr11:94350678-94350679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:94350556-94350772	HUVEC	blood vessel:	n/a	chr11:94350658-94350666 chr11:94350656-94350668 chr11:94350656-94350667

Variant related genes	Relation type
PIWIL4	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1939142	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36017311	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4317946	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs508720	0.80[EUR][1000 genomes]
rs511367	0.81[EUR][1000 genomes]
rs607139	0.92[CEU][hapmap];0.82[CHB][hapmap];0.96[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs628715	0.81[EUR][1000 genomes]
rs631413	0.81[EUR][1000 genomes]
rs656730	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs658766	0.81[EUR][1000 genomes]
rs67306868	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73516322	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7926749	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7942260	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs600206	CWC15	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94323600-94351800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:94341600-94355200	Weak transcription	Ovary	ovary
4	chr11:94341600-94355200	Weak transcription	Pancreas	Pancrea
5	chr11:94341600-94355400	Weak transcription	Gastric	stomach
6	chr11:94344400-94351000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:94345000-94354800	Weak transcription	Left Ventricle	heart
8	chr11:94346800-94353000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:94346800-94353000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:94347000-94351400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:94347000-94353000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:94347000-94353600	Weak transcription	Right Ventricle	heart
13	chr11:94347000-94355400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:94347000-94355600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:94347000-94355800	Weak transcription	NHDF-Ad	bronchial
16	chr11:94347400-94354800	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:94347400-94356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:94347600-94357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
20	chr11:94347800-94355600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:94348000-94355200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:94348200-94358400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:94348600-94353000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:94348600-94355400	Weak transcription	Spleen	Spleen
25	chr11:94349000-94353000	Weak transcription	Fetal Stomach	stomach
26	chr11:94349000-94356000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:94349400-94355400	Weak transcription	Primary T cells from cord blood	blood
28	chr11:94349600-94355400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:94349600-94357000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:94349800-94351000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:94349800-94353000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:94349800-94353800	Weak transcription	Psoas Muscle	Psoas
33	chr11:94349800-94355600	Strong transcription	Fetal Intestine Large	intestine
34	chr11:94350200-94352200	Weak transcription	Aorta	Aorta
35	chr11:94350200-94358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:94350200-94358200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:94350400-94350800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:94350600-94351400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:94350600-94355600	Weak transcription	Lung	lung

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