Variant report

Variant	rs4317946
Chromosome Location	chr11:94358866-94358867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1939142	0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34335788	0.85[ASN][1000 genomes]
rs36017311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508720	0.85[EUR][1000 genomes]
rs511367	0.86[EUR][1000 genomes]
rs600206	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs607139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628715	0.86[EUR][1000 genomes]
rs631413	0.86[EUR][1000 genomes]
rs656730	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs658766	0.86[EUR][1000 genomes]
rs67306868	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114942	0.81[EUR][1000 genomes]
rs7114944	0.81[EUR][1000 genomes]
rs73516322	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4317946	RP11-867G2.6	cis	Nerve Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94347600-94359600	Weak transcription	Adipose Nuclei	Adipose
2	chr11:94354000-94359600	Weak transcription	Aorta	Aorta
3	chr11:94354200-94359400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94356000-94360200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:94357000-94363800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:94357800-94359400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:94358200-94359400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:94358400-94359600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:94358400-94360200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr11:94358600-94359800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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