Variant report
Variant | rs12796588 |
---|---|
Chromosome Location | chr11:107159716-107159717 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10444318 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11212134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11212148 | 1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11212174 | 1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11212199 | 1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11212238 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12361977 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12362330 | 0.81[EUR][1000 genomes] |
rs12362335 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12363600 | 1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12364307 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12365270 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12365910 | 1.00[ASN][1000 genomes] |
rs1263297 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1272372 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12800923 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17587706 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17662199 | 1.00[ASN][1000 genomes] |
rs1989215 | 1.00[ASN][1000 genomes] |
rs2432867 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34129089 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34443916 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34661012 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34846704 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34938694 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35468021 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35504279 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs476028 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs480609 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs487705 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs504617 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs510528 | 0.85[EUR][1000 genomes] |
rs514117 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs517734 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs517929 | 1.00[CHB][hapmap] |
rs518580 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs526875 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs527801 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs528337 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs529341 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs536636 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs537563 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs541782 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs546313 | 1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs548049 | 1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs549909 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs554506 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs570235 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs584778 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs588678 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs589415 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59590014 | 0.83[EUR][1000 genomes] |
rs596268 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs599677 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs602625 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs612080 | 1.00[CHB][hapmap] |
rs619933 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs626091 | 1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs627440 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs628609 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
rs632186 | 1.00[CHB][hapmap] |
rs632910 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs632942 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs633543 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs644954 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs649331 | 1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs652429 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
rs659040 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs661085 | 1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs664836 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs667198 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs668415 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67052454 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs673267 | 0.85[EUR][1000 genomes] |
rs67382158 | 1.00[ASN][1000 genomes] |
rs67428239 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs68000908 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs68027391 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7118326 | 1.00[ASN][1000 genomes] |
rs7129866 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72986689 | 1.00[ASN][1000 genomes] |
rs72990457 | 1.00[ASN][1000 genomes] |
rs72997052 | 1.00[ASN][1000 genomes] |
rs784147 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs784149 | 0.85[EUR][1000 genomes] |
rs7924335 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv898364 | chr11:106944975-107285636 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv898365 | chr11:106944975-107430300 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv898366 | chr11:106944975-107433835 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv898367 | chr11:106944975-107443420 | Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv898369 | chr11:106958304-107443420 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv832260 | chr11:106975094-107181795 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv556279 | chr11:107006900-107186896 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv1035911 | chr11:107020991-107198181 | Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv898370 | chr11:107027991-107430300 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
10 | nsv1040190 | chr11:107045534-107175661 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | nsv898372 | chr11:107049968-107433835 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
12 | nsv1038368 | chr11:107116577-107664181 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
13 | nsv541163 | chr11:107116577-107664181 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
14 | nsv898373 | chr11:107124903-107433835 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
15 | nsv832261 | chr11:107145901-107321562 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
16 | nsv898374 | chr11:107156880-107263130 | Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
17 | nsv556280 | chr11:107158740-107231605 | Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:107147600-107167200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr11:107152800-107164200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
3 | chr11:107153000-107191400 | Weak transcription | Stomach Smooth Muscle | stomach |
4 | chr11:107153400-107179200 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
5 | chr11:107154400-107176200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
6 | chr11:107159000-107164400 | Weak transcription | Pancreas | Pancrea |