Variant report

Variant	rs12796822
Chromosome Location	chr11:36232726-36232727
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12421151	0.85[AFR][1000 genomes]
rs34469588	1.00[AMR][1000 genomes]
rs35064146	1.00[AMR][1000 genomes]
rs35739875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58341682	0.85[AMR][1000 genomes]
rs67662396	1.00[AMR][1000 genomes]
rs7938873	1.00[AMR][1000 genomes]
rs7943995	1.00[AMR][1000 genomes]
rs7950892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:36218200-36233000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:36218400-36233000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36218600-36232800	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:36219200-36232800	Weak transcription	Fetal Lung	lung
7	chr11:36219200-36248600	Weak transcription	Ovary	ovary
8	chr11:36220600-36233200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:36220600-36233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:36220600-36241600	Weak transcription	HSMM	muscle
11	chr11:36221200-36233400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:36221400-36235200	Weak transcription	Fetal Intestine Small	intestine
13	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:36222000-36239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:36222200-36234600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:36222200-36235000	Weak transcription	Esophagus	oesophagus
17	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
18	chr11:36223000-36233200	Weak transcription	Brain Anterior Caudate	brain
19	chr11:36225600-36233000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:36226600-36233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:36226800-36241600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:36227000-36233000	Weak transcription	Fetal Brain Male	brain
23	chr11:36227000-36238400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:36227200-36232800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:36227400-36232800	Weak transcription	Brain Substantia Nigra	brain
26	chr11:36227400-36233000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:36229400-36236600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:36230200-36233000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:36230200-36233000	Weak transcription	Brain Germinal Matrix	brain
30	chr11:36231400-36232800	Enhancers	NHEK	skin
31	chr11:36231400-36237800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:36231600-36232800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:36231600-36232800	Enhancers	HMEC	breast
34	chr11:36231600-36233000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr11:36231600-36234200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:36231600-36237200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:36231800-36233200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:36232200-36241400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:36232400-36233800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:36232400-36234600	Enhancers	Fetal Brain Female	brain
41	chr11:36232600-36234000	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links