Variant report

Variant	rs58341682
Chromosome Location	chr11:36236793-36236794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36235314..36237766-chr11:36240242..36242085,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12796822	0.85[AMR][1000 genomes]
rs34454619	0.87[AMR][1000 genomes]
rs34469588	0.85[AMR][1000 genomes]
rs35064146	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35739875	0.85[AMR][1000 genomes]
rs57433104	0.85[AMR][1000 genomes]
rs67662396	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7109078	0.87[AMR][1000 genomes]
rs73441314	0.85[AMR][1000 genomes]
rs73441327	0.85[AMR][1000 genomes]
rs7938873	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7943995	0.85[AMR][1000 genomes]
rs7950892	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36219200-36248600	Weak transcription	Ovary	ovary
3	chr11:36220600-36241600	Weak transcription	HSMM	muscle
4	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:36222000-36239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
7	chr11:36226800-36241600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:36227000-36238400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:36231400-36237800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:36231600-36237200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:36232200-36241400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:36232800-36237200	Enhancers	Brain Hippocampus Middle	brain
13	chr11:36232800-36237800	Enhancers	Brain Substantia Nigra	brain
14	chr11:36233000-36237200	Enhancers	Fetal Brain Male	brain
15	chr11:36233000-36237600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:36233200-36237600	Enhancers	Brain Anterior Caudate	brain
17	chr11:36233400-36237800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:36233800-36237800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:36234000-36244600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:36234800-36241000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36234800-36248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:36234800-36254000	Weak transcription	Right Atrium	heart
23	chr11:36235000-36237000	Enhancers	Esophagus	oesophagus
24	chr11:36235000-36237200	Enhancers	NHEK	skin
25	chr11:36235000-36237800	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:36235200-36236800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:36235200-36237000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:36235200-36237000	Enhancers	HMEC	breast
29	chr11:36235200-36237600	Enhancers	Brain Germinal Matrix	brain
30	chr11:36235200-36238800	Enhancers	Fetal Intestine Small	intestine
31	chr11:36235400-36237400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:36235400-36237600	Enhancers	Fetal Brain Female	brain
33	chr11:36235800-36238600	Enhancers	Fetal Intestine Large	intestine
34	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:36236000-36237000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:36236200-36237200	Enhancers	Fetal Muscle Leg	muscle
37	chr11:36236400-36237800	Enhancers	Fetal Kidney	kidney
38	chr11:36236600-36236800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:36236600-36236800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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