Variant report

Variant	rs7109078
Chromosome Location	chr11:36241910-36241911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36235314..36237766-chr11:36240242..36242085,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12793749	0.87[AMR][1000 genomes]
rs16928578	0.87[AMR][1000 genomes]
rs34454619	1.00[AMR][1000 genomes]
rs58341682	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36219200-36248600	Weak transcription	Ovary	ovary
3	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
5	chr11:36234000-36244600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:36234800-36248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:36234800-36254000	Weak transcription	Right Atrium	heart
8	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:36237000-36248600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:36237000-36248600	Weak transcription	Esophagus	oesophagus
12	chr11:36237800-36244400	Weak transcription	Fetal Kidney	kidney
13	chr11:36237800-36248600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36237800-36250600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:36238600-36248800	Weak transcription	Fetal Intestine Large	intestine
16	chr11:36238800-36242000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:36239800-36242400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:36239800-36252200	Weak transcription	Hela-S3	cervix
19	chr11:36240400-36253800	Weak transcription	Psoas Muscle	Psoas
20	chr11:36241000-36242000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:36241000-36242200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:36241000-36242400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:36241400-36242400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:36241600-36242000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:36241600-36242000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:36241600-36242200	ZNF genes & repeats	HSMM	muscle

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