Variant report

Variant	rs12797914
Chromosome Location	chr11:119613092-119613093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119611511..119614247-chr11:119631604..119633429,2	MCF-7	breast:
2	chr11:119612432..119615293-chr2:70313000..70315605,2	K562	blood:
3	chr11:119610859..119613381-chr11:119617021..119619803,2	K562	blood:

Variant related genes	Relation type
ENSG00000169564	Chromatin interaction
ENSG00000179818	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10790339	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10892444	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10892445	0.85[EUR][1000 genomes]
rs10892446	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11217429	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11217434	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11217437	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217438	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217440	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11217441	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11217442	0.85[EUR][1000 genomes]
rs11217448	0.85[EUR][1000 genomes]
rs12421434	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12421466	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12786505	0.84[EUR][1000 genomes]
rs12793075	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12796806	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12800445	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1876795	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2136420	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2136421	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368936	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35248712	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829260	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245206	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4489755	0.85[EUR][1000 genomes]
rs4505073	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936496	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4938718	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4938719	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4938720	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58136657	0.85[EUR][1000 genomes]
rs6589770	0.86[EUR][1000 genomes]
rs73006720	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3357144	chr11:119610642-119614840	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119609800-119613600	Enhancers	Pancreas	Pancrea
2	chr11:119610400-119614400	Enhancers	Gastric	stomach
3	chr11:119611200-119614400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr11:119611600-119614400	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr11:119611800-119613200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr11:119611800-119613200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr11:119612000-119613200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr11:119612000-119613200	Bivalent Enhancer	Adipose Nuclei	Adipose
9	chr11:119612000-119613200	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr11:119612000-119613200	Bivalent Enhancer	Placenta	Placenta
11	chr11:119612000-119613200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr11:119612000-119613400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:119612000-119613600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:119612000-119613600	Enhancers	Esophagus	oesophagus
15	chr11:119612000-119613600	Enhancers	Left Ventricle	heart
16	chr11:119612000-119613800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr11:119612200-119613200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
18	chr11:119612200-119613400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:119612200-119613400	Active TSS	Brain Angular Gyrus	brain
20	chr11:119612200-119613600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr11:119612200-119613600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:119612200-119613600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr11:119612200-119613600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:119612200-119613600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:119612200-119613600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:119612200-119613600	Enhancers	Lung	lung
27	chr11:119612200-119613600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
28	chr11:119612200-119614200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:119612200-119614200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr11:119612200-119614200	Enhancers	Fetal Heart	heart
31	chr11:119612400-119613400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:119612400-119613400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:119612400-119613600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr11:119612400-119613600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:119612400-119613800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:119612400-119613800	Bivalent Enhancer	Fetal Intestine Large	intestine
37	chr11:119612400-119614000	Flanking Active TSS	Fetal Brain Female	brain
38	chr11:119612600-119613200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:119612600-119613200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr11:119612600-119613200	Bivalent Enhancer	Fetal Intestine Small	intestine
41	chr11:119612600-119613200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
42	chr11:119612600-119613400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
43	chr11:119612600-119613800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr11:119612800-119613200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:119612800-119613200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:119612800-119613200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:119612800-119613200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:119612800-119613200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:119612800-119613200	Active TSS	Brain Anterior Caudate	brain
50	chr11:119612800-119613200	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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