Variant report

Variant	rs11217442
Chromosome Location	chr11:119612384-119612385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119612041..119612599-chr11:119978926..119979560,2	MCF-7	breast:
2	chr11:119611511..119614247-chr11:119631604..119633429,2	MCF-7	breast:
3	chr11:119591659..119592433-chr11:119611738..119612581,2	MCF-7	breast:
4	chr11:119536864..119537801-chr11:119611746..119612718,4	MCF-7	breast:
5	chr11:119610859..119613381-chr11:119617021..119619803,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10892444	0.87[EUR][1000 genomes]
rs10892445	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10892446	0.88[EUR][1000 genomes]
rs11217426	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217429	0.81[EUR][1000 genomes]
rs11217430	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11217437	0.88[EUR][1000 genomes]
rs11217438	0.88[EUR][1000 genomes]
rs11217440	0.88[EUR][1000 genomes]
rs11217441	0.88[EUR][1000 genomes]
rs11217448	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607610	0.91[EUR][1000 genomes]
rs12361192	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418662	0.91[EUR][1000 genomes]
rs12421434	0.86[EUR][1000 genomes]
rs12421466	0.86[EUR][1000 genomes]
rs12786505	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12793075	0.88[EUR][1000 genomes]
rs12796806	0.88[EUR][1000 genomes]
rs12797914	0.85[EUR][1000 genomes]
rs12800445	0.81[EUR][1000 genomes]
rs1876795	0.81[EUR][1000 genomes]
rs2136420	0.82[EUR][1000 genomes]
rs2136421	0.82[EUR][1000 genomes]
rs2368936	0.82[EUR][1000 genomes]
rs35248712	0.88[EUR][1000 genomes]
rs4245206	0.88[EUR][1000 genomes]
rs4489755	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4505073	0.86[EUR][1000 genomes]
rs4936496	0.82[EUR][1000 genomes]
rs4938718	0.82[EUR][1000 genomes]
rs4938719	0.87[EUR][1000 genomes]
rs4938720	0.88[EUR][1000 genomes]
rs58136657	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589770	0.98[EUR][1000 genomes]
rs7109251	0.85[ASN][1000 genomes]
rs73006720	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952366	0.91[EUR][1000 genomes]
rs9666263	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037739	chr11:119592989-119630641	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3357144	chr11:119610642-119614840	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119609200-119612600	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:119609800-119613600	Enhancers	Pancreas	Pancrea
3	chr11:119610400-119614400	Enhancers	Gastric	stomach
4	chr11:119610600-119612400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:119611200-119612600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:119611200-119614400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:119611600-119612600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:119611600-119612800	Bivalent Enhancer	Brain Substantia Nigra	brain
9	chr11:119611600-119614400	Bivalent Enhancer	Stomach Mucosa	stomach
10	chr11:119611800-119613200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr11:119611800-119613200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr11:119612000-119612400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:119612000-119612400	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:119612000-119612400	Bivalent Enhancer	Liver	Liver
17	chr11:119612000-119612400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
18	chr11:119612000-119612400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr11:119612000-119612400	Active TSS	Fetal Brain Female	brain
20	chr11:119612000-119612400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr11:119612000-119612600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:119612000-119612600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:119612000-119612600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:119612000-119612800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:119612000-119613000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:119612000-119613000	Enhancers	Right Ventricle	heart
27	chr11:119612000-119613000	Enhancers	Spleen	Spleen
28	chr11:119612000-119613200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr11:119612000-119613200	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr11:119612000-119613200	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr11:119612000-119613200	Bivalent Enhancer	Placenta	Placenta
32	chr11:119612000-119613200	Bivalent Enhancer	Fetal Stomach	stomach
33	chr11:119612000-119613400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:119612000-119613600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:119612000-119613600	Enhancers	Esophagus	oesophagus
36	chr11:119612000-119613600	Enhancers	Left Ventricle	heart
37	chr11:119612000-119613800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
38	chr11:119612200-119612400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr11:119612200-119612400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:119612200-119612400	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr11:119612200-119612400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:119612200-119612400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:119612200-119612400	Bivalent Enhancer	Primary B cells from cord blood	blood
44	chr11:119612200-119612400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
45	chr11:119612200-119612400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:119612200-119612400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:119612200-119612400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:119612200-119612400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
49	chr11:119612200-119612400	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr11:119612200-119612400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links