Variant report

Variant	rs9666263
Chromosome Location	chr11:119589703-119589704
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119587850..119589350-chr11:119589562..119592404,2	MCF-7	breast:
2	chr11:119586554..119590249-chr11:119604143..119607234,3	K562	blood:
3	chr11:119554400..119557288-chr11:119589688..119591871,2	MCF-7	breast:
4	chr11:119582343..119585155-chr11:119589653..119593219,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10790339	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10892444	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10892445	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10892446	0.82[EUR][1000 genomes]
rs11217426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217429	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11217430	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217437	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11217438	0.82[EUR][1000 genomes]
rs11217440	0.82[EUR][1000 genomes]
rs11217441	0.82[EUR][1000 genomes]
rs11217442	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217448	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607610	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12361192	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418662	1.00[CEU][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12421434	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12421466	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12786505	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12793075	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12796806	0.82[EUR][1000 genomes]
rs12800445	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1876795	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2136420	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2136421	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2368936	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35248712	0.82[EUR][1000 genomes]
rs3829260	0.81[EUR][1000 genomes]
rs4245206	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs4489755	0.96[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4505073	0.82[CEU][hapmap]
rs4936496	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4938718	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4938719	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4938720	0.82[EUR][1000 genomes]
rs58136657	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6589770	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73006720	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7952366	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119572600-119592000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:119573000-119591800	Weak transcription	Left Ventricle	heart
4	chr11:119574000-119597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:119575200-119591600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:119580800-119597000	Weak transcription	Lung	lung
7	chr11:119581000-119591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:119581000-119591600	Weak transcription	Colonic Mucosa	Colon
9	chr11:119581200-119590600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:119582200-119593600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:119584600-119591600	Weak transcription	Fetal Heart	heart
12	chr11:119584600-119591800	Weak transcription	Placenta	Placenta
13	chr11:119584800-119592000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:119585200-119591200	Weak transcription	Stomach Mucosa	stomach
15	chr11:119585200-119591800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:119585200-119592000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:119585200-119596600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:119585800-119590400	Weak transcription	Fetal Stomach	stomach
19	chr11:119586000-119590000	Weak transcription	HMEC	breast
20	chr11:119586200-119595200	Genic enhancers	Esophagus	oesophagus
21	chr11:119586400-119590200	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:119586400-119590400	Strong transcription	NHEK	skin
23	chr11:119586400-119597600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:119587000-119590400	Enhancers	Brain Substantia Nigra	brain
25	chr11:119587200-119590600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:119587400-119590600	Enhancers	Brain Angular Gyrus	brain
27	chr11:119587600-119590800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:119587600-119590800	Enhancers	Brain Hippocampus Middle	brain
29	chr11:119587600-119590800	Weak transcription	Pancreas	Pancrea
30	chr11:119587800-119592000	Weak transcription	Fetal Intestine Large	intestine
31	chr11:119588400-119591600	Weak transcription	Fetal Kidney	kidney
32	chr11:119588400-119596800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:119588600-119590200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:119588600-119592400	Weak transcription	Gastric	stomach
35	chr11:119588600-119597400	Weak transcription	NH-A	brain
36	chr11:119588800-119591400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:119589000-119590000	Weak transcription	Fetal Thymus	thymus
38	chr11:119589000-119590600	Weak transcription	Fetal Brain Female	brain
39	chr11:119589000-119590800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:119589000-119590800	Weak transcription	Right Ventricle	heart
41	chr11:119589000-119591200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:119589000-119592000	Weak transcription	Brain Anterior Caudate	brain
43	chr11:119589000-119594800	Weak transcription	Brain Germinal Matrix	brain
44	chr11:119589200-119590400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:119589200-119591200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:119589200-119591200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:119589200-119591200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:119589200-119591400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:119589200-119591400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:119589200-119591600	Strong transcription	Fetal Intestine Small	intestine

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