Variant report

Variant	rs12801555
Chromosome Location	chr11:16361642-16361643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10128558	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10160356	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10832583	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10832596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023905	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11023914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12281323	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1393923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16932896	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16345800-16367000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:16348400-16362600	Weak transcription	Left Ventricle	heart
4	chr11:16348800-16368600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:16358200-16366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:16358200-16368600	Weak transcription	Pancreas	Pancrea
7	chr11:16360200-16366400	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16360200-16369200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16360400-16362800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16360800-16362400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:16360800-16362400	Weak transcription	Fetal Lung	lung
12	chr11:16361000-16362800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:16361000-16362800	Weak transcription	Fetal Intestine Small	intestine
14	chr11:16361400-16362600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:16361600-16366800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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