Variant report

Variant	rs11023905
Chromosome Location	chr11:16319386-16319387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16253250..16255469-chr11:16319154..16321553,2	K562	blood:
2	chr11:16317353..16319622-chr11:16356044..16358376,2	K562	blood:
3	chr11:16318535..16320234-chr11:16433595..16435121,2	K562	blood:
4	chr11:16301382..16303241-chr11:16318945..16321849,2	K562	blood:
5	chr11:16312308..16315200-chr11:16317482..16320293,3	K562	blood:
6	chr11:16315419..16322751-chr11:16322783..16327004,9	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10128558	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10160356	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10832583	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10832595	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10832596	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11023876	0.83[CEU][hapmap]
rs11023877	0.80[CEU][hapmap]
rs11023888	0.83[CEU][hapmap]
rs11023911	0.83[CEU][hapmap]
rs11023914	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281323	1.00[EUR][1000 genomes]
rs12801555	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1393923	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16932876	1.00[YRI][hapmap]
rs16932896	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17539593	0.83[CEU][hapmap]
rs2351959	0.82[MEX][hapmap]
rs2351960	0.83[CEU][hapmap]
rs2882811	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2631763	chr11:16319386-16320889	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16302200-16321600	Weak transcription	Left Ventricle	heart
2	chr11:16313200-16319800	Enhancers	Fetal Heart	heart
3	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
4	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:16315400-16319400	Weak transcription	Small Intestine	intestine
6	chr11:16315600-16321600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:16315600-16322200	Weak transcription	Fetal Kidney	kidney
8	chr11:16317000-16320000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16317200-16319400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:16318800-16319800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16319000-16319400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16319000-16319400	Weak transcription	Fetal Brain Female	brain
14	chr11:16319000-16319400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:16319000-16319400	Enhancers	Pancreas	Pancrea
16	chr11:16319000-16319400	Enhancers	Psoas Muscle	Psoas
17	chr11:16319000-16319400	Enhancers	Right Ventricle	heart
18	chr11:16319000-16319400	Flanking Active TSS	K562	blood
19	chr11:16319000-16319600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:16319000-16319600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:16319000-16319600	Enhancers	Fetal Lung	lung
22	chr11:16319200-16319400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:16319200-16319600	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr11:16319200-16319600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:16319200-16319600	Enhancers	Skeletal Muscle Female	skeletal muscle

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