Variant report

Variant	rs16932876
Chromosome Location	chr11:16300057-16300058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11023905	1.00[YRI][hapmap]
rs12789999	1.00[CEU][hapmap]
rs12798752	1.00[CEU][hapmap]
rs12798896	1.00[CEU][hapmap]
rs12808081	1.00[CEU][hapmap]
rs2882811	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34066971	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35696784	0.84[AMR][1000 genomes]
rs71484706	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484707	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484711	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16279600-16300400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16286800-16314800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16292400-16301600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:16296800-16301800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:16297800-16301200	Enhancers	K562	blood
6	chr11:16298600-16302800	Weak transcription	Pancreas	Pancrea
7	chr11:16298800-16302000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:16299200-16301600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:16299200-16301600	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr11:16299600-16300400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:16299600-16301600	Enhancers	NHEK	skin
12	chr11:16300000-16300200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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