Variant report

Variant	rs12808081
Chromosome Location	chr11:16121210-16121211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16118808..16121567-chr11:16157087..16159349,2	K562	blood:
2	chr11:16116317..16118652-chr11:16120891..16122652,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12789999	1.00[CEU][hapmap]
rs12798896	1.00[CEU][hapmap]
rs16932876	1.00[CEU][hapmap]
rs35398750	1.00[EUR][1000 genomes]
rs71482998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
2	chr11:16116200-16122200	Weak transcription	Fetal Heart	heart
3	chr11:16117400-16122000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:16117400-16123200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:16118800-16121600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:16118800-16122000	Enhancers	Liver	Liver
7	chr11:16119200-16122000	Enhancers	HMEC	breast
8	chr11:16119600-16130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:16119800-16122400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16120000-16122000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:16120400-16121600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:16120400-16121800	Enhancers	Fetal Intestine Small	intestine
13	chr11:16120600-16121400	Weak transcription	Brain Germinal Matrix	brain
14	chr11:16120600-16121600	Enhancers	Fetal Intestine Large	intestine
15	chr11:16120600-16122000	Enhancers	Fetal Lung	lung
16	chr11:16120800-16121600	Weak transcription	Small Intestine	intestine
17	chr11:16120800-16130800	Weak transcription	Esophagus	oesophagus
18	chr11:16121000-16121400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:16121000-16121400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:16121000-16122000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:16121200-16121600	Enhancers	A549	lung
22	chr11:16121200-16122800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links