Variant report

Variant	rs35398750
Chromosome Location	chr11:16117075-16117076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16116317..16118652-chr11:16120891..16122652,2	K562	blood:
2	chr11:16114661..16117349-chr11:16367658..16369395,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12808081	1.00[EUR][1000 genomes]
rs71482998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
3	chr11:16108400-16118400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:16113000-16119200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:16113600-16117600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:16114200-16117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:16114200-16117600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:16114800-16119000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:16115400-16117600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16115400-16119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:16115600-16118800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:16116000-16117600	Strong transcription	Fetal Intestine Large	intestine
13	chr11:16116000-16117800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:16116000-16119200	Weak transcription	Left Ventricle	heart
15	chr11:16116200-16117800	Weak transcription	Fetal Kidney	kidney
16	chr11:16116200-16118800	Weak transcription	Liver	Liver
17	chr11:16116200-16119000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:16116200-16119000	Weak transcription	Psoas Muscle	Psoas
19	chr11:16116200-16122200	Weak transcription	Fetal Heart	heart
20	chr11:16116400-16118800	Weak transcription	Fetal Lung	lung
21	chr11:16116800-16117200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:16116800-16117200	Weak transcription	NHEK	skin
23	chr11:16116800-16118400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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