Variant report

Variant	rs35696784
Chromosome Location	chr11:16355147-16355148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16932876	0.84[AMR][1000 genomes]
rs34066971	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71484706	0.84[AMR][1000 genomes]
rs71484707	0.84[AMR][1000 genomes]
rs71484711	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16333800-16356400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:16340800-16357600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16345800-16367000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:16346200-16356800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:16348400-16362600	Weak transcription	Left Ventricle	heart
7	chr11:16348800-16368600	Weak transcription	Brain Germinal Matrix	brain
8	chr11:16349400-16357400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16349600-16357800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:16351000-16360000	Weak transcription	Fetal Heart	heart
11	chr11:16353000-16355800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16353000-16361400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:16353600-16355400	Weak transcription	Fetal Intestine Large	intestine
14	chr11:16354800-16360400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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