Variant report

Variant	rs34066971
Chromosome Location	chr11:16323977-16323978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16932876	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35696784	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71484706	0.84[AMR][1000 genomes]
rs71484707	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71484711	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16320600-16340600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16323000-16330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16323200-16330000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16323400-16330400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:16323600-16327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:16323600-16330400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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