Variant report

Variant	rs12803558
Chromosome Location	chr11:24288205-24288206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11820874	0.80[AFR][1000 genomes]
rs11821417	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11823343	0.80[AFR][1000 genomes]
rs11824883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828947	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277966	0.80[EUR][1000 genomes]
rs12282611	0.80[EUR][1000 genomes]
rs12785699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12788920	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12790279	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12791360	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12791623	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12803800	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12805125	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12805363	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1443050	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16912295	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16912345	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16912379	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16912391	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912402	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925305	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34237482	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34756722	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35008727	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4923167	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55751762	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56157310	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123539	0.80[EUR][1000 genomes]
rs72874176	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438263	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv897077	chr11:24091682-24308924	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467753	chr11:24190138-24335921	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv553783	chr11:24190138-24335921	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv897083	chr11:24210635-24346093	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897084	chr11:24232604-24308924	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897085	chr11:24233998-24305935	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv467754	chr11:24246904-24290818	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv553784	chr11:24246904-24290818	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv897086	chr11:24261507-24356464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv553786	chr11:24278379-24290818	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv1804492	chr11:24280281-24290777	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv1805070	chr11:24280281-24290777	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv553787	chr11:24280281-24298455	Enhancers ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3380594	chr11:24280425-24311995	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3469108	chr11:24283576-24289274	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3507780	chr11:24283776-24288774	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv20652	chr11:24284653-24288207	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv820879	chr11:24284653-24288207	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
22	esv3477908	chr11:24284894-24288309	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
23	esv3477919	chr11:24284894-24288309	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv1806952	chr11:24285000-24290777	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv1809154	chr11:24285000-24290777	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv1814985	chr11:24285000-24290777	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv1809801	chr11:24285000-24290818	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv1812803	chr11:24285000-24290818	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv1804412	chr11:24285000-24324926	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv1806348	chr11:24285000-24324926	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv1811560	chr11:24285000-24324926	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	nsv553788	chr11:24285117-24292165	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
33	nsv553789	chr11:24285117-24298455	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
34	esv3469097	chr11:24285168-24288326	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
35	esv3469119	chr11:24285251-24288237	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
36	esv1810820	chr11:24285297-24290777	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
37	esv1811936	chr11:24285425-24290777	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
38	esv2760377	chr11:24286221-24296462	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24288000-24288600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr11:24288200-24288600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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