Variant report

Variant	rs12282611
Chromosome Location	chr11:24271352-24271353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10834307	0.87[EUR][1000 genomes]
rs11027789	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11825384	0.80[EUR][1000 genomes]
rs11827298	0.88[EUR][1000 genomes]
rs12269768	0.81[AFR][1000 genomes]
rs12276587	0.84[EUR][1000 genomes]
rs12277966	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12279442	0.87[EUR][1000 genomes]
rs12293105	0.86[EUR][1000 genomes]
rs12786638	0.82[EUR][1000 genomes]
rs12788920	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs12790279	0.80[EUR][1000 genomes]
rs12791360	0.80[EUR][1000 genomes]
rs12791623	0.80[EUR][1000 genomes]
rs12801480	0.87[EUR][1000 genomes]
rs12803558	0.80[EUR][1000 genomes]
rs12803800	0.80[EUR][1000 genomes]
rs16912295	0.81[EUR][1000 genomes]
rs1899540	0.93[EUR][1000 genomes]
rs2068454	0.86[EUR][1000 genomes]
rs2083753	0.86[EUR][1000 genomes]
rs2099889	0.86[EUR][1000 genomes]
rs2099890	0.85[EUR][1000 genomes]
rs34345988	0.93[EUR][1000 genomes]
rs34756722	0.80[EUR][1000 genomes]
rs4923167	0.80[EUR][1000 genomes]
rs56157310	0.81[EUR][1000 genomes]
rs59246618	0.86[EUR][1000 genomes]
rs59797575	0.86[EUR][1000 genomes]
rs6484040	0.86[EUR][1000 genomes]
rs7104550	0.81[EUR][1000 genomes]
rs7104694	0.85[EUR][1000 genomes]
rs7107321	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7114960	0.87[EUR][1000 genomes]
rs7123539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124856	0.87[EUR][1000 genomes]
rs7126291	0.86[EUR][1000 genomes]
rs72874176	0.80[EUR][1000 genomes]
rs7928616	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv897077	chr11:24091682-24308924	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467753	chr11:24190138-24335921	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv553783	chr11:24190138-24335921	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv897083	chr11:24210635-24346093	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897084	chr11:24232604-24308924	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897085	chr11:24233998-24305935	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv467754	chr11:24246904-24290818	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv553784	chr11:24246904-24290818	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv897086	chr11:24261507-24356464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24268600-24271600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:24270800-24271600	Enhancers	Dnd41	blood

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