Variant report

Variant	rs7107321
Chromosome Location	chr11:24259879-24259880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10834307	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11027789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027791	0.80[AFR][1000 genomes]
rs11827298	0.87[EUR][1000 genomes]
rs12270316	0.81[AFR][1000 genomes]
rs12276587	0.85[EUR][1000 genomes]
rs12277966	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12279442	0.88[EUR][1000 genomes]
rs12282611	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12293105	0.87[EUR][1000 genomes]
rs12786638	0.83[EUR][1000 genomes]
rs12788920	0.90[CEU][hapmap]
rs12799857	0.80[EUR][1000 genomes]
rs12801480	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1443047	0.82[AFR][1000 genomes]
rs16912295	0.80[EUR][1000 genomes]
rs1899540	0.94[EUR][1000 genomes]
rs2068454	0.87[EUR][1000 genomes]
rs2083753	0.87[EUR][1000 genomes]
rs2099889	0.87[EUR][1000 genomes]
rs2099890	0.86[EUR][1000 genomes]
rs34345988	0.92[EUR][1000 genomes]
rs56157310	0.80[EUR][1000 genomes]
rs59246618	0.87[EUR][1000 genomes]
rs59797575	0.87[EUR][1000 genomes]
rs6484040	0.87[EUR][1000 genomes]
rs7104550	0.83[EUR][1000 genomes]
rs7104694	0.86[EUR][1000 genomes]
rs7114960	0.86[EUR][1000 genomes]
rs7123539	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124856	0.88[EUR][1000 genomes]
rs7126291	0.87[EUR][1000 genomes]
rs7928616	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv897077	chr11:24091682-24308924	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv467752	chr11:24190138-24267222	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv553782	chr11:24190138-24267222	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv467753	chr11:24190138-24335921	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553783	chr11:24190138-24335921	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897083	chr11:24210635-24346093	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1051026	chr11:24214723-24260429	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv897084	chr11:24232604-24308924	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv897085	chr11:24233998-24305935	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv467754	chr11:24246904-24290818	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv553784	chr11:24246904-24290818	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24257200-24260200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:24259800-24262800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:24259800-24262800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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