Variant report

Variant	rs12807018
Chromosome Location	chr11:93019901-93019902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93018701..93021080-chr11:93023667..93026629,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765600	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10765601	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10765603	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10831019	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10831020	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10831024	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10831025	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10831026	0.86[AMR][1000 genomes]
rs11020243	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11020246	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11020263	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11020267	0.83[EUR][1000 genomes]
rs11020270	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12364612	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12419719	0.86[AMR][1000 genomes]
rs12421032	0.86[AMR][1000 genomes]
rs12790059	0.86[AMR][1000 genomes]
rs12807308	0.86[AMR][1000 genomes]
rs12807762	0.86[AMR][1000 genomes]
rs2399638	0.82[EUR][1000 genomes]
rs4132359	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4301752	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4753455	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7107679	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7110891	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7114042	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7122184	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7122837	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7126901	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7936149	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7950862	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1807162	chr11:93013387-93022144	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv555905	chr11:93018077-93022144	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3454842	chr11:93019304-93024102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93016600-93020600	Weak transcription	GM12878-XiMat	blood
2	chr11:93018800-93020600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:93018800-93021400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93019400-93028600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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